Slides & Handouts
Slides and handouts for past training sessions will be posted here
Wednesday January 25, 2023 - Jupyter Notebook
Jupyter_Notebook_2023_01_25.pdf
Wednesday January 4, 2023 - Introduction to BioHPC - New User Training
NewUserTraining_2023_01_04.pdf
Wednesday December 7, 2022 - Introduction to BioHPC - New User Training
NewUserTraining_2022_12_07.pdf
Wednesday November 9, 2022 - Introduction to Git and GitLab
Introduction_to_Git_and_GitLab
Wednesday November 2, 2022 - Introduction to BioHPC - New User Training
NewUserTraining_2022_11_02.pdf
Wednesday October 26, 2022 - Image Processing III - Introduction to CryoEM Resources on BioHPC
Wednesday October 19, 2022 - Image Processing with MATLAB
Image_Processing_with_MATLAB.pdf
basics.mlx
whole_images.mlx
segmentation.mlx
regions_of_interest.mlx
deconvolution.mlx
Wednesday October 12, 2022 - Image Processing with Python
BioHPC_Python_image_processing_10_12_2022.pdf
2022_12_15__python_image_processing__resources.zip
Wednesday September 28, 2022 - Molecular Dynamcis (MD) Simulation with BioHPC
20220928 - Molecular Dynamcis (MD) Simulation with BioHPC
Wednesday June 22, 2022 - Distributed Deep Learning
20220622 Distributed Deep Learning with Python
Installation guid: openmpi with CUDA
pytorch_synthetic_benchmark.py
submit_horovod_pytorch_multi_gpu.sh
Wednesday May 11, 2022 - BioHPC storage overview
biohpc_storage_overview_05092022.pdf
Wednesday April 27, 2022 - Homology Modeling and GPCR Drug Discovery with BioHPC
20220427_drug_discovery_with_biohpc.pdf
Wednesday April 20, 2022 - Principal Component Analysis
Wednesday March 23, 2022 - Alphafold from Google DeepMind: Multimer and Astrocyte workflow
Wednesday March 16, 2022 - Introduction to BioHPC - Data handling with R
2022_03_16_data_handling_with_r.pdf
Wednesday March 9, 2022 - Introduction to BioHPC - Jupyter Notebook
Wednesday March 2, 2022 - Introduction to BioHPC - New User Training
NewUserTraining_2022_11_02.pdf
Wednesday February 23 2022 - Astrocyte: A Scientific Workflow Platform on the BioHPC Cluster
20220223-astrocyte.pdf (9.0 MB)
Wednesday February 16 2022 - Software Installation on BioHPC
2022_02_16_software_installation_on_biohpc.pdf (2.0 MB)
Wednesday February 9 2022 - Introduction to Python on BioHPC
2022_02_09_python_on_biohpc.pdf (1.9 MB)
python_on_biohpc_scripts_2022.zip (538.9 KB)
Wednesday January 26 2022 - Introduction to Linux (Part 3)
linux3.pdf (737.5 KB)
Wednesday January 19 2022 - Introduction to Linux (Part 2)
linuxii.pdf (1.0 MB)
Wednesday January 12 2022 - Introduction to Linux (Part 1)
introlinux_2022.pdf (1.7 MB)
Wednesday December 15, 2021 - Introduction to Image Processing with Python
python_image_processing_2021_12_15_.pdf (5.3 MB)
2021_12_15__python_image_processing__resources.zip (2.2 MB)
Wednesday November 17, 2021 - Running CryoSparc on BioHPC
cryosparc_on_biohpc_11172021.pptx (1.9 MB)
Wednesday November 10, 2021 - Introduction to GitLab CI/CD (Continuous Integration / Continuous Delivery)
gitlab_ci.pdf (2.7 MB)
Wednesday October 27, 2021 - Introduction to Deep Learning
10_26_2021_keras.pdf (2.6 MB)
Wednesday October 20, 2021 - Software installation on BioHPC
user_software_installation_in_biohpc.pdf (642.3 KB)
Wednesday October 13, 2021 - Introduction to ImageJ
imagej_biohpc_2021.pdf (2.2 MB)
Wednesday September 15 2021 - Alphafold, Google Deepmind's protein prediction platform
alphafold_09152021.pdf (1.7 MB)
Wednesday September 8 2021 - An Introduction of Hyperparameter Optimization with BioHPC
20210908_parameter_runner.pdf (2.7 MB)
Wednesday August 18 2021 - Linux Workshop
linux_workshop.pdf (831.0 KB)
Wednesday August 18 2021 - Machine Learning with R
machine_learning_using_r.pdf (328.6 KB)
r_project_files.zip (98.5 KB)
Wednesday August 11 2021 - Introduction to Git and GitLab
gitintro.pdf (1.8 MB)
Wednesday July 28 2021 - GitLab Container Registry
gitlab_container_registry.pptx (927.7 KB)
Wednesday July 14 2021 - Visualization on BioHPC
2021_07_14_biohpc_visualization.pdf (3.5 MB)
Monday July 12 2021 - BioHPC TownHall
20210712town_hall_final_.pdf (3.7 MB)
Wednesday June 23 2021 - Drug Discovery with BioHPC
20210623_drug_discovery_with_biohpc.pdf (5.9 MB)
Wednesday June 16 2021 - cryoEM resources on BioHPC
cryoem_resource_on_biohpc_061621.pdf (2.7 MB)
sample_job_submission_script.zip (931 bytes)
Wednesday June 9 2021 - Workstations and Thin Clients
workstation_presentation9.pdf (4.0 MB)
Wednesday May 19 2021 - Jupyter Notebook
jupyter-notebook-20210519.pptx (1.8 MB)
jupyter_demos_2021.zip (14.7 MB)
Wednesday May 12 2021 - Introduction to Spark
biohpc_spark_intro_5_12_2021.pdf (731.0 KB)
submit_spark_pi.sh (2.0 KB)
Wednesday April 28 2021 - Data handling in R
data_handling_r_04282021.pdf (1.6 MB)
Wednesday April 20 2021 - Singularity on BioHPC
2021_04_20_singularity.pdf (1018.9 KB)
Wednesday April 14 2021 - SLURM
slurm.pdf (1.5 MB) demos.zip (7.7 MB)
Wenesday March 24 2021 - Efficient Use of BioHPC Storage Systems
biohpc_efficient_storage_solutions.pdf (670.0 KB)
Wednesday March 17 2021 - Reproducible Developmental Environment with Vagrant
20210317_reproducible_del_env_with_vagrant.pdf (256.4 KB)
Wednesday Feburary 24 2021 - Introduction to Linux (Part II) grep - sed - awk
linuxii_jupyter_bash_kernel_guides_02242021.pdf (600.9 KB)
linuxii_grep_sed_awk_02242021.zip (1.8 MB)
Wednesday February 10 2021 - Introduction to Linux (Part 1)
introlinux.pdf (1.7 MB)
Wednesday January 20 2021 - Storage on BioHPC
biohpc_storage_training_01202021.pdf (1.3 MB)
Wednesday January 13 2021 - Python on BioHPC
2021_01_13_python_on_biohpc.pdf (4.1 MB)