BioHPC is committed to making it as easy as possible for users to access the BioHPC systems and services. Although we require some mandatory training for users, we don't expect everyone to be an expert in command line Linux, paralllel programming and HPC terminology!
The BioHPC Cloud services provide access to compute, storage, and applications via your web browser:
Want to submit a batch job or run a GUI application on the cluster?
Need to access your files or transfer data to/from a collaborator?
Performing NGS data analysis?
BioHPC now offers various services to users performing next genration sequencing analysis:
RStudio provides a comprehensive web-based development environment for the popular R statistics language. Develop your R scripts using our RStudio server, and then run them on large datasets using the nucleus cluster.
Please notice that our Rstudio server (rstudio.biohpc.swmed.edu) is a shared service, where all Rstudio users login to this Rstudio server and run their jobs. Please only run lightweight Rstudio jobs on Rstudio server. If you have CPU or memory intensive jobs, we strongly suggest you to use Rstudio OnDemand (portal.biohpc.swmed.edu/terminal/ondemand_rstudio). The OnDemand Rstudio will allocate a dedicated computing node to the user for 20 hours to run Rstudio, so that your job will not affect other users, unlike Rstudio server.
Working in Biophysics?
The SBGrid suite of tools is hosted on BioHPC systems, available via the cluster and as an NFS mount to use on your own machine(s).
Need to store your source code?