BioHPC now provides an easy-to use NGS pipeline for RNA-Seq analysis, as well as a Galaxy server.
The BioHPC NGS Pipeline is a simple web-based data analysis pipeline developed in collaboration with CRI. Currently implements an RNA-Seq differential expression workflow.
Galaxy is a powerful web-based system for designing and running data analysis workflows using many 3rd party tools. Galaxy at BioHPC is configured to use the Nucleus compute cluster for large jobs. The BioHPC team can install additional tools, help you to optimize workflows, and even integrate your own tools into Galaxy.