BioHPC Training Sessions 2019

BioHPC training sessions will take place each Wednesday, at 10:30 am until 12:00 pm in seminar room NL6.125.

•   1st Wed of each month -  New user training* [Mandatory for new users]
•   2nd & 3rd Wed of each month -HPC & Computer Science topics
•   4th Wed of each month - Bioinformatics / HPC User Showcase

5th Wed of Jan/May/Aug/Oct - Have coffee with the BioHPC: On months with a 5th Wednesday we will host Coffee with BioHPC - an informal forum for users to discuss projects or questions with BioHPC staff and others. Coffee and light snacks provided.

*Training is now mandatory for new users. Users applying for a new BioHPC account must attend the new user training session, offered monthly, before receiving full access to BioHPC systems. Prior to the training new users should register for an account online, via . Initial access to the BioHPC web portal will be limited, permitting new users to review guides and training materials. After the new user attends the mandatory training, full login and storage access to BioHPC systems will be granted.

Date Type Session Name
01/02/2019 Intro Introduction to BioHPC
01/09/2019 CS/HPC Git on BioHPC
01/16/2019 CS/HPC Parallel MATLAB on BioHPC
01/23/2019 Showcase BICF UCSC Genome Browser and Encode Data Download
01/30/2019 Coffee Coffee with BioHPC
02/06/2019 Intro Introduction to BioHPC
02/13/2019 CS/HPC Basics of Linux I  - File Navigation, Operations, Permissions
02/20/2019 CS/HPC Canceled
02/27/2019 CS/HPC Basics of Linux II - Piping, Text Manipulation, Awk, Sed
03/06/2019 Intro Introduction to BioHPC
03/13/2019 CS/HPC Basics of Linux III - Shell Scripting
03/20/2019 CS/HPC Singularity Containers
03/27/2019 Showcase HPC Seurat on-Demand
04/03/2019 Intro Introduction to BioHPC
04/10/2019 CS/HPC BioHPC Cloud and on-Demand Services
04/17/2019 CS/HPC OpenMP at a Glance
04/24/2019 Showcase BICF Astrocyte Workflows on the BioHPC
05/01/2019 Intro Introduction to BioHPC
05/08/2019 CS/HPC Jupyter Notebook and JupyterLab
05/15/2019 CS/HPC Big Data Visualization
05/22/2019 Showcase BICF TCGA
05/29/2019 Coffee Coffee with BioHPC
06/05/2019 Intro Introduction to BioHPC
06/12/2019 CS/HPC No Training
06/19/2019 CS/HPC Parallel R/R
06/26/2019 Showcase HPC No Training
07/03/2019 Intro Introduction to BioHPC
07/10/2019 CS/HPC GNUPlot
07/17/2019 CS/HPC Mpi4py: Distributed Computing with Python
07/24/2019 Showcase BICF Machine Learning
07/31/2019 Coffee Coffee with BioHPC
08/07/2019 Intro Introduction to BioHPC
08/14/2019 CS/HPC Collaborative Software Development with GitLab
08/21/2019 CS/HPC Monitoring and Optimizing Workflows
08/28/2019 Showcase HPC Deep Learning with Keras
09/04/2019 Intro Introduction to BioHPC
09/11/2019 CS/HPC Basics of Linux I  - File Navigation, Operations, Permissions
09/18/2019 CS/HPC Basics of Linux II - Piping, Text Manipulation, Awk, Sed
09/25/2019 CS/HPC Basics of Linux III - Shell Scripting
10/02/2019 Intro Introduction to BioHPC
10/09/2019 CS/HPC Using the SLURM Job Scheduler
10/16/2019 CS/HPC Parallel Python
10/23/2019 Showcase BICF Single Cell RNASeq
10/30/2019 Coffee Coffee with BioHPC
11/06/2019 Intro Introduction to BioHPC
11/13/2019 CS/HPC OpenACC - Parallelizing Code across the CPU and GPU
11/20/2019 Showcase HPC Medical Image Processing with ImageJ and SimpleITK
11/27/2019 No Training -- Happy Thanksgiving!  
12/04/2019 Intro Introduction to BioHPC
12/11/2019 CS/HPC Future Developments in BioHPC
12/18/2019 Showcase HPC TBD
12/25/2019 No Training -- Happy Holidays!

Please direct any queries to .